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Amino Orotic Acid

    VTB
    Specifications
    HS Code 425825
    Product Name Amino Orotic Acid
    Chemical Name 5-Aminoorotic acid
    Cas Number 7164-43-4
    Molecular Formula C5H5N3O4
    Molecular Weight 171.11 g/mol
    Appearance White to off-white powder
    Purity >=98% typical product grade
    Storage Condition Store at 2-8°C, protected from light and moisture
    Solubility Soluble in DMSO; solubility in water may be limited
    Product Category Biochemical intermediate / pyrimidine derivative
    Application Used as a biochemical intermediate and in pyrimidine metabolism research
    Shelf Life Typically 24 months under recommended storage
    Shipping Condition Ambient or refrigerated depending on supplier
    Synonyms 5-Amino-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid

    As an accredited Amino Orotic Acid factory, we enforce strict quality protocols—every batch undergoes rigorous testing to ensure consistent efficacy and safety standards.

    Packing & Storage
    Packing Amino Orotic Acid is supplied in a 25 g amber glass bottle with a secure screw cap and hazard labels.
    Container Loading (20′ FCL) Amino Orotic Acid loaded in a 20′ FCL container, securely sealed and protected for safe international shipment.
    Shipping Amino Orotic Acid is generally shipped as a non-hazardous chemical unless otherwise regulated. Use clean, dry, tightly closed, properly labeled containers; protect from moisture, heat, light, and physical damage. Follow the SDS and all applicable national and international transport regulations.
    Storage Store Amino Orotic Acid in a cool, dry, well-ventilated area away from direct sunlight, heat, and ignition sources. Keep containers tightly closed and protected from moisture. Store separately from strong oxidizing agents and incompatible chemicals. Use appropriate secondary containment, clear labeling, and follow the SDS and local regulations.
    Shelf Life Stored dry, sealed, and protected from light at room temperature, Amino Orotic Acid typically has a shelf life of 2–3 years.
    Application of Amino Orotic Acid

    How Does Amino Orotic Acid Route to 5-Fluoroorotic Acid in Yeast Counterselection Media?

    The conversion of amino orotic acid (5-aminoorotic acid, CAS 7164-43-4) to 5-fluoroorotic acid is a low-temperature diazotization–thermal decomposition sequence used to supply yeast counterselection media. The process conflict is the thermal instability of the isolated diazonium tetrafluoroborate: decomposition initiates above 60 °C and becomes difficult to control above 90 °C, with rapid nitrogen evolution and tarry by-product formation that must be removed by activated carbon treatment before recrystallization. In production-scale equipment, the diazotization is run in a jacketed glass-lined or Hastelloy C-276 reactor with a PTFE-sheathed thermocouple, a pH probe resistant to fluoroboric acid, and overhead agitation at 120–180 rpm. The addition ratio for the diazotization stage is 1.0–1.2 molar equivalents of sodium nitrite dosed over 30–60 min into a suspension of 5-aminoorotic acid in 1.0–1.5 equivalents of concentrated hydrochloric acid at 0–5 °C. After residual nitrous acid is quenched with sulfamic acid, fluoroboric acid is charged at 1.1–1.5 equivalents to precipitate the diazonium tetrafluoroborate salt. The isolated salt is washed with cold methanol and diethyl ether, dried under reduced pressure at 25–35 °C, and then decomposed under controlled vacuum at 60–90 °C. Downstream purification for biotech-grade 5-fluoroorotic acid involves recrystallization from hot water/methanol and HPLC assay per USP General Chapter 621 to a purity of ≥99%. Terminal product types are 5-fluoroorotic acid monohydrate powder, sterile-filtered 5-fluoroorotic acid yeast counterselection plates, and synthetic dropout agar formulations. In yeast counterselection media, the final formulation addition ratio is 0.5–1.0 mg/mL, added after autoclaving from a 100 mg/mL dimethyl sulfoxide stock solution when the agar has cooled to 55–65 °C, followed by sterile filtration through a 0.22 μm membrane. Compliance standards include REACH Regulation (EC) No 1907/2006, ISO 9001:2015, and Research Use Only labeling; this material is not manufactured under ISO 13485:2016 clinical diagnostic quality management system requirements.

    In pyrimidine antimetabolite API intermediate synthesis, the 5-position amino substituent of 5-aminoorotic acid provides a directed diazonium entry to 5-fluoroorotic acid, which is then decarboxylated to fluorouracil. The regulatory boundary for this route is ICH Q7 / EU GMP Part II for active pharmaceutical ingredient intermediates, with finished-drug manufacturing under FDA 21 CFR 210/211 and compendial release under the USP-NF Fluorouracil monograph. The diazotization stage uses the same 1.0–1.2 molar equivalent sodium nitrite feed at 0–5 °C, but the subsequent decarboxylation imposes a narrower processing window: the 5-fluoroorotic acid intermediate is charged into a high-boiling polar solvent with a decarboxylation catalyst at 0.5–2.0 wt% relative to substrate, heated to 180–220 °C under nitrogen, and carbon dioxide evolution is monitored by mass flow until HPLC disappearance of the 5-fluoroorotic acid. Published data for specific catalytic combinations in this exact substrate configuration are limited; development batches typically establish endpoint by chromatographic conversion rather than by fixed residence time. The decarboxylation reactor is a glass-lined or 316L stainless steel vessel with a pressure relief device, a vent scrubber for carbon dioxide, and a distillative solvent recovery loop; because the reaction mass crosses the flammability concern threshold of high-boiling solvent vapor at elevated temperature, inert gas blanketing and oxygen monitoring below 5% v/v are used. Terminal product types include fluorouracil injection USP at 50 mg/mL, fluorouracil topical cream at 5% w/w, and fluorouracil API powder. Formulation addition ratios in the finished dosage forms are 50 mg fluorouracil per mL of alkaline aqueous vehicle at pH 8.6–9.0 for injection, and 5 g fluorouracil per 100 g cream base for topical application. The following compliance matrix summarizes the critical standard designations for this route.

    Process stageStandard or methodCritical control parameter
    DiazotizationICH Q7 / EU GMP Part IIReaction temperature 0–5 °C
    HPLC purityUSP General Chapter 621Peak area normalization ≥99%
    Finished injectionFDA 21 CFR 210/211; USP-NF Fluorouracil monograph50 mg/mL; pH 8.6–9.0
    Topical creamFDA 21 CFR 210/211; USP Topical Semisolid monograph5% w/w

    When the Diazonium Intermediate Is Diverted to Chloro, Bromo, or Iodo Derivatives

    When the diazonium intermediate is diverted to chloro, bromo, or iodo derivatives, 5-aminoorotic acid becomes a platform for Sandmeyer halogenation rather than fluorination. The addition ratios differ by halogen: copper(I) chloride is charged at 1.0–1.5 molar equivalents in concentrated hydrochloric acid for 5-chloroorotic acid; copper(I) bromide is charged at 1.0–1.5 molar equivalents in hydrobromic acid for 5-bromoorotic acid; potassium iodide is charged at 1.2–2.0 molar equivalents for 5-iodoorotic acid. Sodium nitrite is held at 1.0–1.1 molar equivalents to avoid residual nitrous acid carryover into the halogenation vessel. The downstream process requires transferring the diazonium solution generated at 0–5 °C into a chilled halogenation receiver with jacket temperature −5 to +5 °C; uncontrolled warming above 15 °C promotes hydrolysis to 5-hydroxyorotic acid, which lowers crude purity and complicates recrystallization. After nitrogen evolution subsides, the crude product is quenched into cold deionized water, filtered, and recrystallized from ethanol/water to an HPLC purity of ≥98%. Terminal product types are 5-chloroorotic acid, 5-bromoorotic acid, and 5-iodoorotic acid supplied as building blocks for Suzuki-Miyaura and Sonogashira cross-coupling reactions in medicinal chemistry campaigns. These derivatives are not pharmacopoeial substances; compliance standards are ISO 9001:2015, REACH Regulation (EC) No 1907/2006, and technical grade specifications negotiated on a project basis. The following comparative addition ratios apply at kilo-to-pilot scale.

    Target derivativeHalogenation reagentMolar ratioJacket temperature
    5-Chloroorotic acidCuCl / HCl1.0–1.5−5 to +5 °C
    5-Bromoorotic acidCuBr / HBr1.0–1.5−5 to +5 °C
    5-Iodoorotic acidKI1.2–2.0−5 to +5 °C

    Batch-to-batch variability in pyrimidine enzyme inhibition assays is governed less by absolute purity than by residual ionic species retained from the final recrystallization. For 5-aminoorotic acid used as an orotic acid analog in dihydroorotate dehydrogenase and orotate phosphoribosyltransferase assay systems, the critical release criterion is chloride content below 500 ppm and sulfate content below 1000 ppm because residual halide and sulfate ions alter the ionic strength of kinetic buffers. Compliance standards are Research Use Only labeling aligned with ISO 9001:2015 and ISO 17025:2017; no USP or EP monograph exists for 5-aminoorotic acid as an enzyme assay reagent. The downstream process is low-throughput and precision-driven: dry powder is dissolved in assay buffer at concentrations from 0.1 mM to 10 mM, with dimethyl sulfoxide as a cosolvent at 0.1–1.0% v/v final concentration to maintain enzyme solubility without denaturation. Terminal product types include lyophilized enzyme assay kits, 5-aminoorotic acid reference standards for HPLC calibration, and custom dissolution buffers for pyrimidine metabolism research. Published kinetic constants for this specific substrate configuration are limited; end users validate inhibitor concentrations by initial-rate analysis rather than relying on universal IC50 values.

    Modified Nucleoside Feedstock and Solid-Phase Oligonucleotide Synthesis

    Modified nucleoside feedstock and solid-phase oligonucleotide synthesis use 5-aminoorotic acid as the starting carboxylic acid for decarboxylation to 5-aminouracil, followed by Vorbrüggen glycosylation with protected ribose. The glycosylation addition ratio uses 1.0–1.5 equivalents of 1-O-acetyl-2,3,5-tri-O-benzoyl-β-D-ribofuranose per equivalent of 5-aminouracil and 1.2–2.0 equivalents of trimethylsilyl triflate in anhydrous acetonitrile at 40–70 °C; residual water in the solvent must be ≤50 ppm by Karl Fischer titration to prevent silyl reagent deactivation. After glycosylation, the downstream process proceeds through selective 5'-O-dimethoxytritylation, 3'-O-phosphitylation with 2-cyanoethyl N,N-diisopropylchlorophosphoramidite, and purification of the phosphoramidite by silica gel chromatography to ≥98% phosphorus-31 NMR purity. Compliance standards are ISO 9001:2015 with REACH registration for the building block supply; phosphoramidite products are research use only and are not covered by ICH Q7 unless a registered drug substance is produced from them. Terminal product types include 5-aminouridine, 5-aminouridine 5'-O-DMT-3'-O-(2-cyanoethyl-N,N-diisopropyl) phosphoramidite, and modified antisense or aptamer oligonucleotides used in hybridization-based assay development. Published data for pilot-scale manufacture of 5-aminouridine from 5-aminoorotic acid is limited; bench-scale batches typically require chromatographic rather than crystallization-based purification, and batch-to-batch coupling efficiency on an automated DNA/RNA synthesizer should be verified by trityl conductivity trace at 0.2 μmol to 1.0 μmol synthesis scale.

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    Certification & Compliance
    More Introduction

    Supplied as a white to off-white crystalline powder, Amino Orotic Acid is identified in chemical inventories as 5-amino-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid and is registered under CAS number 7164-43-4. The molecular formula is C₅H₅N₃O₄, corresponding to a formula weight of 171.11 g·mol⁻¹. Commercial product models are differentiated by assay and impurity profile rather than by a harmonized pharmacopoeial grade designation. Laboratory reagent grade is typically released at ≥98.0% HPLC area purity, while fine-chemical intermediate grade is released at ≥99.0% HPLC area purity with reduced orotic acid content. Micronized lots with defined particle-size distribution are supplied when downstream processing requires dispersion in a solid formulation or viscous reaction medium. The C-5 primary amino group is the key structural distinction from the parent orotic acid. This substituent provides a reactive handle for diazotization, acylation, Schiff base formation, and transition-metal coordination without eliminating the 2,4-dione tautomeric system. The powder is sparingly soluble in water, dissolves in dilute aqueous alkali, and can be charged to reactors as an alkaline solution or as a damp filter cake after isolation. Because the free carboxylic acid is part of the pyrimidinedione ring, pH adjustment controls precipitation and crystal habit. The material should not be confused with mineral orotate salts such as magnesium orotate or zinc orotate, which are salts of unsubstituted orotic acid and are used in dietary supplement applications.

    What Process-Control Limits Apply During Pilot-Scale Isolation?

    During pilot-scale campaigns in a 100 L glass-lined reactor with centrifuge discharge, the isolation of 5-aminoorotic acid is governed by the solubility difference between the alkaline sodium salt and the free acid. Acidification of an alkaline liquor with dilute mineral acid is maintained at 10–15 °C; uncontrolled acid addition generates high-aspect-ratio crystals smaller than 20 µm that blind filter cloths and extend filtration time. The slurry is therefore held below 25 °C and anti-solvent is added over 45–60 min to maintain filterability. Filtration is followed by a chilled deionized-water wash at 5–10 °C to remove residual inorganic salts, with wash volume controlled by filtrate conductivity. Vacuum tray drying is conducted at 60 °C and −0.08 MPa until loss on drying falls below 0.5%. Dry powder handling can generate static charge; equipment grounding and local exhaust ventilation are specified for open transfers. The primary aromatic amine ring is incompatible with nitrosating agents, strong oxidizers, and concentrated mineral acids at elevated temperature. Contact with nitrite under acidic conditions generates the diazonium intermediate, which is thermally unstable above 5 °C. Published full-scale filtration data for this specific compound are limited; the above operating limits are derived from toll-manufacturing batch records and should be re-established for each reactor geometry.

    In synthetic use, Amino Orotic Acid serves as an intermediate for 5-substituted pyrimidines. Diazotization in 3 M hydrochloric acid at 0–5 °C with 1.05 mol sodium nitrite per mol of substrate, followed by addition to potassium iodide at −5 °C, yields the 5-iodo derivative; the same diazonium intermediate is used to prepare 5-cyano and 5-chloro analogs via Sandmeyer-type chemistry. Acylation with acetyl chloride in pyridine at 0–5 °C protects the C-5 amino group before esterification of the C-4 carboxylic acid. Condensation with substituted benzaldehydes in refluxing ethanol produces Schiff bases that can be isolated by filtration after cooling; these ligands are subsequently used in coordination chemistry with cobalt(II), copper(II), and zinc(II) salts. For metal-binding studies, the ligand-to-metal stoichiometry is confirmed by elemental analysis and infrared spectroscopy. The carboxylate oxygen and the C-5 amino nitrogen may both participate in coordination, but the binding mode must be established by single-crystal X-ray diffraction for each complex. Preparative-scale reactions are monitored by reversed-phase HPLC with UV detection at 254 nm to track consumption of the starting material and formation of the more retained 5-substituted orotate product. Published procedures for analogous 5-aminopyrimidines describe these ranges; when applying them to Amino Orotic Acid, pilot reactions should verify conversion and impurity profiles.

    Solution stability is pH- and temperature-dependent. Alkaline solutions of Amino Orotic Acid are used for reactor charging because the carboxylate salt increases solubility, but the pyrimidinedione ring can undergo slow hydrolytic opening under strongly basic conditions. Prepared alkaline solutions are therefore used within the working shift. Acidic solutions should not be stored because the protonated amino group can form the corresponding diazonium ion if nitrite is present. For long-term storage, the dry solid is more stable than solution forms. Thermal desolvation of any hydrate or solvate should be verified by thermogravimetric analysis; published thermograms for this specific compound are limited, so each new source of material should be profiled before routine release.

    Solid-State Specification Limits and Certificate-of-Analysis Parameters

    Release testing for high-purity lots is performed against supplier specifications that combine pharmacopoeial general chapters with purchaser-specific impurity limits. The following table is representative of a typical certificate of analysis for a fine-chemical intermediate grade; exact values must be confirmed with the supplier because no monograph for 5-aminoorotic acid is published in the United States Pharmacopeia or the European Pharmacopoeia.

    ParameterTest methodAcceptance criterion
    AppearanceVisual inspectionWhite to off-white crystalline powder
    IdentificationFTIR against qualified reference standardSpectrum concordant
    Assay as C₅H₅N₃O₄HPLC, USP <621>, C18, 254 nm≥99.0% area
    Loss on dryingUSP <731>, 105 °C, 2 h≤0.5%
    Water contentKarl Fischer, USP <921>≤0.5%
    Residue on ignitionUSP <281>≤0.1%
    Heavy metalsUSP <231>≤10 ppm
    Related substancesHPLC, USP <621>Orotic acid ≤0.5%; total impurities ≤1.0%

    For chromatographic purity, a reversed-phase method with an end-capped octadecylsilane column, 25 cm × 4.6 mm, 5 µm particle size, and a mobile-phase gradient of 0.1% phosphoric acid and acetonitrile is used. System suitability criteria typically include a tailing factor for the amino orotic acid peak of not more than 2.0 and a resolution between orotic acid and the main peak of not less than 1.5. Method precision should be generated by the receiving laboratory; a relative standard deviation of ≤1.0% for six replicate injections is commonly used as a validation target, but this is method performance rather than a product property. The C-5 amino group gives the product a stronger UV chromophore at 254 nm than the corresponding unsubstituted orotic acid, so HPLC area percent is a conservative estimate of mass purity if non-UV-absorbing impurities are present. Residual solvent levels are addressed by gas chromatography using reference solvent mixtures. Purchasers should specify limits for methanol, ethanol, or acetonitrile if the product is isolated from those solvents. When the product enters a pharmaceutical supply chain, ICH Q3C residual solvent classifications are applied; methanol, if used in isolation, is controlled to ≤3000 ppm, and class 3 solvents such as ethanol are controlled to ≤5000 ppm. Thermal analysis is not generally a release criterion, but it is used during reference standard qualification. If polymorphic consistency is required, X-ray powder diffraction is preferred because visual appearance and FTIR alone may not distinguish crystal forms.

    When 5-Aminoorotic Acid Replaces Unsubstituted Orotic Acid in Pyrimidine Syntheses

    Replacement of orotic acid with Amino Orotic Acid is warranted when a C-5 functional group is required in the target structure. The amino substituent increases the electron density of the pyrimidinedione ring and changes the regioselectivity of electrophilic substitution relative to the parent acid. In comparison with unsubstituted orotic acid, the product is more reactive toward nitrous acid and acylating agents but requires stricter temperature control to avoid diazonium decomposition. Compared with 5-fluoroorotic acid, which is primarily used as a counterselection agent in yeast molecular genetics, Amino Orotic Acid is used as a synthetic intermediate rather than as a biological selection tool. Compared with mineral orotate salts, Amino Orotic Acid is not a salt form and does not provide a mineral cation carrier function. The table below summarizes the key distinctions for common materials in the same product family.

    MaterialCAS numberC-5 substituentTypical function
    Orotic acid65-86-1HydrogenParent acid; used to prepare mineral orotate salts
    5-Aminoorotic acid7164-43-4Primary aminoSynthetic intermediate for diazotization, acylation, and Schiff base formation
    5-Fluoroorotic acid703-95-7FluorineCounterselection agent in yeast molecular genetics

    Regulatory and safety documentation for Amino Orotic Acid is mixture- and supplier-specific. Downstream users should confirm TSCA, REACH, and CLP inventory status using CAS 7164-43-4, request a current safety data sheet, and evaluate residual solvent and elemental impurity data before use in regulated synthesis. The material is stored in tightly closed containers at room temperature in a dry area; exposure to high relative humidity promotes particle agglomeration. There is no harmonized pharmacopoeial monograph, so buyer-seller agreements define the certified limits for each lot. When the product is intended for pharmaceutical intermediate use, reference standards are qualified by NMR, FTIR, and HPLC retention time, and a retest date is usually assigned from stability data rather than from a fixed expiry rule. Handling of the crystalline powder requires the same engineering controls used for other fine organic powders with primary aromatic amine character; open transfer is conducted under local exhaust ventilation, and prolonged contact with nitrosating agents is avoided.